J3_7A09_008
3D structure
- PDB id
- 7A09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7A09|1|2|G|1274, 7A09|1|2|G|1507, 7A09|1|2|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A09_008 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1516
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7A09|1|2|C|1272
7A09|1|2|C|1273
7A09|1|2|G|1274
7A09|1|2|G|1275
7A09|1|2|A|1276
7A09|1|2|C|1277
*
7A09|1|2|G|1320
7A09|1|2|G|1321
7A09|1|2|G|1322
7A09|1|2|U|1323
7A09|1|2|G|1324
*
7A09|1|2|U|1504
7A09|1|2|U|1505
7A09|1|2|A|1506
7A09|1|2|G|1507
7A09|1|2|A|1508
7A09|1|2|U|1509
7A09|1|2|G|1510
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain U
- Ubiquitin-40S ribosomal protein S27a
- Chain l
- 40S ribosomal protein S29
- Chain u
- 40S ribosomal protein S10
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