J3_7A1G_006

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A1G_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1341

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7A1G|1|2|C|1161
7A1G|1|2|C|1162
7A1G|1|2|A|1163
7A1G|1|2|G|1164
*
7A1G|1|2|C|1581
7A1G|1|2|U|1582
7A1G|1|2|A|1583
7A1G|1|2|G|1584
7A1G|1|2|U|1585
7A1G|1|2|A|1586
7A1G|1|2|A|1587
*
7A1G|1|2|U|1609
7A1G|1|2|G|1610
7A1G|1|2|A|1611
7A1G|1|2|U|1612
7A1G|1|2|U|1613
7A1G|1|2|A|1614
7A1G|1|2|C|1615
7A1G|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain h

40S ribosomal protein S28-A