J3_7A1G_009
3D structure
- PDB id
- 7A1G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 7A1G|1|2|A|1217, 7A1G|1|2|G|1445, 7A1G|1|2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A1G_009 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.0893
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7A1G|1|2|C|1215
7A1G|1|2|C|1216
7A1G|1|2|A|1217
7A1G|1|2|G|1218
7A1G|1|2|A|1219
7A1G|1|2|C|1220
*
7A1G|1|2|G|1263
7A1G|1|2|G|1264
7A1G|1|2|G|1265
7A1G|1|2|U|1266
7A1G|1|2|G|1267
*
7A1G|1|2|U|1442
7A1G|1|2|U|1443
7A1G|1|2|A|1444
7A1G|1|2|G|1445
7A1G|1|2|A|1446
7A1G|1|2|C|1447
7A1G|1|2|G|1448
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S10-A
- Chain M
- 40S ribosomal protein S29-A
- Chain N
- Ubiquitin-40S ribosomal protein S31
- Chain y
- Eukaryotic translation initiation factor 3 subunit J
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
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