J3_7A5F_001

3D structure

PDB id

7A5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

7A5F|1|A3|G|1918, 7A5F|1|A3|G|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7A5F_001 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.147

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

7A5F|1|A3|C|1915
7A5F|1|A3|G|1916
7A5F|1|A3|A|1917
7A5F|1|A3|G|1918
7A5F|1|A3|C|1919
7A5F|1|A3|U|1920
7A5F|1|A3|A|1921
*
7A5F|1|A3|U|1983
7A5F|1|A3|A|1984
7A5F|1|A3|G|1985
*
7A5F|1|A3|C|2001
7A5F|1|A3|G|2002
7A5F|1|A3|A|2003
7A5F|1|A3|G|2004

Current chains

Chain A3

16S rRNA

Nearby chains

Chain 23

39S ribosomal protein L34, mitochondrial

Chain 93

39S ribosomal protein L41, mitochondrial

Chain D3

39S ribosomal protein L2, mitochondrial