J3_7ABZ_007

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7ABZ|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ABZ_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2402

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

7ABZ|1|1|C|1306
7ABZ|1|1|A|1307
7ABZ|1|1|A|1308
7ABZ|1|1|G|1309
*
7ABZ|1|1|C|1605
7ABZ|1|1|C|1606
7ABZ|1|1|C|1607
7ABZ|1|1|A|1608
7ABZ|1|1|A|1609
7ABZ|1|1|A|1610
7ABZ|1|1|C|1611
*
7ABZ|1|1|G|1620
7ABZ|1|1|U|1621
7ABZ|1|1|G|1622

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34