J3_7ABZ_020
3D structure
- PDB id
- 7ABZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.21 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCUA
- Length
- 27 nucleotides
- Bulged bases
- 7ABZ|1|2|A|975, 7ABZ|1|2|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ABZ_020 not in the Motif Atlas
- Homologous match to J3_6CZR_062
- Geometric discrepancy: 0.2168
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7ABZ|1|2|U|955
7ABZ|1|2|U|956
7ABZ|1|2|U|957
7ABZ|1|2|A|958
7ABZ|1|2|A|959
7ABZ|1|2|U|960
7ABZ|1|2|U|961
7ABZ|1|2|C|962
*
7ABZ|1|2|G|973
7ABZ|1|2|A|974
7ABZ|1|2|A|975
7ABZ|1|2|G|976
7ABZ|1|2|A|977
7ABZ|1|2|A|978
7ABZ|1|2|C|979
7ABZ|1|2|C|980
7ABZ|1|2|U|981
7ABZ|1|2|U|982
7ABZ|1|2|A|983
7ABZ|1|2|C|984
7ABZ|1|2|C|985
*
7ABZ|1|2|G|1220
7ABZ|1|2|G|1221
7ABZ|1|2|G|1222
7ABZ|1|2|C|1223
7ABZ|1|2|U|1224
7ABZ|1|2|A|1225
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 5
- SsrA-binding protein
- Chain o
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S14
- Chain x
- 30S ribosomal protein S19
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