3D structure

PDB id
7ABZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.21 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUACC*GGGCUA
Length
27 nucleotides
Bulged bases
7ABZ|1|2|A|975, 7ABZ|1|2|G|976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ABZ_020 not in the Motif Atlas
Homologous match to J3_6CZR_062
Geometric discrepancy: 0.2168
The information below is about J3_6CZR_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_59791.1
Basepair signature
cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

7ABZ|1|2|U|955
7ABZ|1|2|U|956
7ABZ|1|2|U|957
7ABZ|1|2|A|958
7ABZ|1|2|A|959
7ABZ|1|2|U|960
7ABZ|1|2|U|961
7ABZ|1|2|C|962
*
7ABZ|1|2|G|973
7ABZ|1|2|A|974
7ABZ|1|2|A|975
7ABZ|1|2|G|976
7ABZ|1|2|A|977
7ABZ|1|2|A|978
7ABZ|1|2|C|979
7ABZ|1|2|C|980
7ABZ|1|2|U|981
7ABZ|1|2|U|982
7ABZ|1|2|A|983
7ABZ|1|2|C|984
7ABZ|1|2|C|985
*
7ABZ|1|2|G|1220
7ABZ|1|2|G|1221
7ABZ|1|2|G|1222
7ABZ|1|2|C|1223
7ABZ|1|2|U|1224
7ABZ|1|2|A|1225

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 5
SsrA-binding protein
Chain o
30S ribosomal protein S10
Chain r
30S ribosomal protein S13
Chain s
30S ribosomal protein S14
Chain x
30S ribosomal protein S19

Coloring options:


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