J3_7ABZ_023

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

7ABZ|1|2|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ABZ_023 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.2306

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7ABZ|1|2|U|1073
7ABZ|1|2|G|1074
*
7ABZ|1|2|U|1083
7ABZ|1|2|G|1084
7ABZ|1|2|U|1085
7ABZ|1|2|U|1086
7ABZ|1|2|G|1087
*
7ABZ|1|2|C|1098
7ABZ|1|2|G|1099
7ABZ|1|2|C|1100
7ABZ|1|2|A|1101
7ABZ|1|2|A|1102

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain j

30S ribosomal protein S5