J3_7ACR_016

3D structure

PDB id

7ACR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of post-translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7ACR|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ACR_016 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1315

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7ACR|1|2|C|826
7ACR|1|2|U|827
7ACR|1|2|U|828
7ACR|1|2|G|829
*
7ACR|1|2|C|857
7ACR|1|2|G|858
7ACR|1|2|G|859
7ACR|1|2|A|860
7ACR|1|2|G|861
*
7ACR|1|2|C|868
7ACR|1|2|G|869
7ACR|1|2|U|870
7ACR|1|2|U|871
7ACR|1|2|A|872
7ACR|1|2|A|873
7ACR|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21