J3_7AFD_009
3D structure
- PDB id
- 7AFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state A (head domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 7AFD|1|1|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AFD_009 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1656
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7AFD|1|1|C|1237
7AFD|1|1|A|1238
7AFD|1|1|A|1239
7AFD|1|1|U|1240
7AFD|1|1|G|1241
*
7AFD|1|1|C|1296
7AFD|1|1|G|1297
7AFD|1|1|U|1298
7AFD|1|1|A|1299
7AFD|1|1|G|1300
7AFD|1|1|U|1301
7AFD|1|1|C|1302
7AFD|1|1|C|1303
*
7AFD|1|1|G|1334
7AFD|1|1|U|1335
7AFD|1|1|C|1336
7AFD|1|1|G|1337
Current chains
- Chain 1
- 16SrRNA of the head domain (residue C931 to G1386)
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
Coloring options: