J3_7AFI_004

3D structure

PDB id

7AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7AFI|1|A|U|871, 7AFI|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AFI_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1066

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7AFI|1|A|C|826
7AFI|1|A|U|827
7AFI|1|A|U|828
7AFI|1|A|G|829
*
7AFI|1|A|C|857
7AFI|1|A|G|858
7AFI|1|A|G|859
7AFI|1|A|A|860
7AFI|1|A|G|861
*
7AFI|1|A|C|868
7AFI|1|A|G|869
7AFI|1|A|U|870
7AFI|1|A|U|871
7AFI|1|A|A|872
7AFI|1|A|A|873
7AFI|1|A|G|874

Current chains

Chain A

16SrRNA

Nearby chains

Chain H

30S ribosomal protein S8