J3_7AFK_007

3D structure

PDB id

7AFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AFK_007 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.2706

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7AFK|1|1|U|1073
7AFK|1|1|G|1074
*
7AFK|1|1|U|1083
7AFK|1|1|G|1084
7AFK|1|1|U|1085
7AFK|1|1|U|1086
*
7AFK|1|1|G|1099
7AFK|1|1|C|1100
7AFK|1|1|A|1101
7AFK|1|1|A|1102

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain B

30S ribosomal protein S2