J3_7AFL_004

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7AFL|1|A|U|871, 7AFL|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AFL_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1448

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7AFL|1|A|C|826
7AFL|1|A|U|827
7AFL|1|A|U|828
7AFL|1|A|G|829
*
7AFL|1|A|C|857
7AFL|1|A|G|858
7AFL|1|A|G|859
7AFL|1|A|A|860
7AFL|1|A|G|861
*
7AFL|1|A|C|868
7AFL|1|A|G|869
7AFL|1|A|U|870
7AFL|1|A|U|871
7AFL|1|A|A|872
7AFL|1|A|A|873
7AFL|1|A|G|874

Current chains

Chain A

16SrRNA

Nearby chains

Chain H

30S ribosomal protein S8