J3_7AFL_005

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7AFL|1|A|C|48, 7AFL|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AFL_005 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1151

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AFL|1|A|G|46
7AFL|1|A|C|47
7AFL|1|A|C|48
7AFL|1|A|U|49
7AFL|1|A|A|50
7AFL|1|A|A|51
7AFL|1|A|C|52
*
7AFL|1|A|G|359
7AFL|1|A|G|360
7AFL|1|A|G|361
7AFL|1|A|G|362
7AFL|1|A|A|363
7AFL|1|A|A|364
7AFL|1|A|U|365
7AFL|1|A|A|366
7AFL|1|A|U|367
*
7AFL|1|A|A|393
7AFL|1|A|G|394
7AFL|1|A|C|395

Current chains

Chain A

16SrRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16