J3_7AFO_004

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7AFO|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AFO_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1057

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7AFO|1|A|C|826
7AFO|1|A|U|827
7AFO|1|A|U|828
7AFO|1|A|G|829
*
7AFO|1|A|C|857
7AFO|1|A|G|858
7AFO|1|A|G|859
7AFO|1|A|A|860
7AFO|1|A|G|861
*
7AFO|1|A|C|868
7AFO|1|A|G|869
7AFO|1|A|U|870
7AFO|1|A|U|871
7AFO|1|A|A|872
7AFO|1|A|A|873
7AFO|1|A|G|874

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain H

30S ribosomal protein S8

Chain U

30S ribosomal protein S21