J3_7AJT_003
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- AUCAG*CUAACUACUGC*GCAUUU
- Length
- 22 nucleotides
- Bulged bases
- 7AJT|1|D3|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AJT_003 not in the Motif Atlas
- Homologous match to J3_8C3A_036
- Geometric discrepancy: 0.4015
- The information below is about J3_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08408.1
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7AJT|1|D3|A|881
7AJT|1|D3|U|882
7AJT|1|D3|C|883
7AJT|1|D3|A|884
7AJT|1|D3|G|885
*
7AJT|1|D3|C|927
7AJT|1|D3|U|928
7AJT|1|D3|A|929
7AJT|1|D3|A|930
7AJT|1|D3|C|931
7AJT|1|D3|U|932
7AJT|1|D3|A|933
7AJT|1|D3|C|934
7AJT|1|D3|U|935
7AJT|1|D3|G|936
7AJT|1|D3|C|937
*
7AJT|1|D3|G|942
7AJT|1|D3|C|943
7AJT|1|D3|A|944
7AJT|1|D3|U|945
7AJT|1|D3|U|946
7AJT|1|D3|U|947
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DA
- 40S ribosomal protein S1-A
- Chain DN
- 40S ribosomal protein S13
- Chain DO
- 40S ribosomal protein S14-A
- Chain JN
- Protein FAF1
- Chain JO
- KRR1 small subunit processome component
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