J3_7AJU_004
3D structure
- PDB id
- 7AJU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 7AJU|1|D3|C|1082, 7AJU|1|D3|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AJU_004 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.5216
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7AJU|1|D3|C|1037
7AJU|1|D3|U|1038
7AJU|1|D3|A|1039
*
7AJU|1|D3|U|1079
7AJU|1|D3|U|1080
7AJU|1|D3|A|1081
7AJU|1|D3|C|1082
7AJU|1|D3|G|1083
*
7AJU|1|D3|C|1090
7AJU|1|D3|A|1091
7AJU|1|D3|A|1092
7AJU|1|D3|A|1093
7AJU|1|D3|G|1094
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DW
- 40S ribosomal protein S22-A
- Chain Db
- 40S ribosomal protein S27-A
- Chain JP
- Protein SOF1
- Chain UG
- U3 small nucleolar RNA-associated protein 7
- Chain UX
- rRNA-processing protein FCF1
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