3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
7AJU|1|D3|C|1082, 7AJU|1|D3|A|1093
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AJU_004 not in the Motif Atlas
Homologous match to J3_4V88_034
Geometric discrepancy: 0.5216
The information below is about J3_4V88_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23622.1
Basepair signature
cWW-tWW-tWW-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7AJU|1|D3|C|1037
7AJU|1|D3|U|1038
7AJU|1|D3|A|1039
*
7AJU|1|D3|U|1079
7AJU|1|D3|U|1080
7AJU|1|D3|A|1081
7AJU|1|D3|C|1082
7AJU|1|D3|G|1083
*
7AJU|1|D3|C|1090
7AJU|1|D3|A|1091
7AJU|1|D3|A|1092
7AJU|1|D3|A|1093
7AJU|1|D3|G|1094

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DW
40S ribosomal protein S22-A
Chain Db
40S ribosomal protein S27-A
Chain JP
Protein SOF1
Chain UG
U3 small nucleolar RNA-associated protein 7
Chain UX
rRNA-processing protein FCF1

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