3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AJU_006 not in the Motif Atlas
Homologous match to J3_4V88_036
Geometric discrepancy: 0.222
The information below is about J3_4V88_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.2
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7AJU|1|D3|U|1168
7AJU|1|D3|G|1169
7AJU|1|D3|G|1170
7AJU|1|D3|A|1171
*
7AJU|1|D3|U|1468
7AJU|1|D3|A|1469
7AJU|1|D3|C|1470
*
7AJU|1|D3|G|1574
7AJU|1|D3|G|1575
7AJU|1|D3|A|1576
7AJU|1|D3|A|1577

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CJ
U3 small nucleolar ribonucleoprotein protein IMP4
Chain DF
40S ribosomal protein S5
Chain DT
40S ribosomal protein S19-A
Chain JG
Ribosomal RNA small subunit methyltransferase NEP1

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