J3_7AQD_006

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

7AQD|1|A|A|1130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.223

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7AQD|1|A|G|1101
7AQD|1|A|G|1102
7AQD|1|A|A|1103
*
7AQD|1|A|U|1127
7AQD|1|A|U|1128
7AQD|1|A|U|1129
7AQD|1|A|A|1130
7AQD|1|A|A|1131
7AQD|1|A|A|1132
7AQD|1|A|G|1133
*
7AQD|1|A|C|1148
7AQD|1|A|A|1149
7AQD|1|A|C|1150

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11