J3_7AQD_008

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7AQD|1|A|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.3033

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7AQD|1|A|C|1344
7AQD|1|A|U|1345
7AQD|1|A|A|1346
7AQD|1|A|A|1347
7AQD|1|A|G|1348
*
7AQD|1|A|C|1650
7AQD|1|A|G|1651
7AQD|1|A|C|1652
7AQD|1|A|A|1653
7AQD|1|A|A|1654
7AQD|1|A|A|1655
7AQD|1|A|C|1656
*
7AQD|1|A|G|1665
7AQD|1|A|U|1666
7AQD|1|A|A|1667
7AQD|1|A|G|1668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34