J3_7AQD_009

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

7AQD|1|A|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1807

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7AQD|1|A|U|1383
7AQD|1|A|C|1384
7AQD|1|A|G|1385
7AQD|1|A|G|1386
7AQD|1|A|G|1387
7AQD|1|A|A|1388
7AQD|1|A|C|1389
*
7AQD|1|A|G|1420
7AQD|1|A|A|1421
7AQD|1|A|C|1422
7AQD|1|A|A|1423
7AQD|1|A|A|1424
*
7AQD|1|A|U|1441
7AQD|1|A|A|1442

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L23