J3_7AQD_012

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7AQD|1|A|A|2547, 7AQD|1|A|U|2548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1234

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7AQD|1|A|C|2546
7AQD|1|A|A|2547
7AQD|1|A|U|2548
7AQD|1|A|C|2549
*
7AQD|1|A|G|2574
7AQD|1|A|U|2575
7AQD|1|A|U|2576
*
7AQD|1|A|A|2590
7AQD|1|A|U|2591
7AQD|1|A|U|2592
7AQD|1|A|A|2593
7AQD|1|A|A|2594
7AQD|1|A|A|2595
7AQD|1|A|G|2596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14