J3_7AQD_013

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_013 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.1846

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7AQD|1|A|C|2818
7AQD|1|A|A|2819
7AQD|1|A|U|2820
*
7AQD|1|A|A|2831
7AQD|1|A|G|2832
7AQD|1|A|U|2833
7AQD|1|A|A|2834
7AQD|1|A|A|2835
7AQD|1|A|G|2836
*
7AQD|1|A|C|2914
7AQD|1|A|G|2915
7AQD|1|A|A|2916
7AQD|1|A|G|2917
7AQD|1|A|G|2918

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3