J3_7AQD_018
3D structure
- PDB id
- 7AQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial RQC complex (Translocating State)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAUAUGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 7AQD|1|A|U|72, 7AQD|1|A|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AQD_018 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.1498
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
7AQD|1|A|A|56
7AQD|1|A|C|57
*
7AQD|1|A|G|70
7AQD|1|A|A|71
7AQD|1|A|U|72
7AQD|1|A|A|73
7AQD|1|A|U|74
7AQD|1|A|G|75
7AQD|1|A|C|76
*
7AQD|1|A|G|109
7AQD|1|A|A|110
7AQD|1|A|U|111
7AQD|1|A|U|112
7AQD|1|A|U|113
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
- Chain h
- 50S ribosomal protein L23
- Chain i
- 50S ribosomal protein L29
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