J3_7AQD_019

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGCCAUAGGA*UGUAG

Length

20 nucleotides

Bulged bases

7AQD|1|A|U|365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_019 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1268

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7AQD|1|A|U|340
7AQD|1|A|G|341
7AQD|1|A|A|342
7AQD|1|A|A|343
7AQD|1|A|G|344
*
7AQD|1|A|C|360
7AQD|1|A|G|361
7AQD|1|A|C|362
7AQD|1|A|C|363
7AQD|1|A|A|364
7AQD|1|A|U|365
7AQD|1|A|A|366
7AQD|1|A|G|367
7AQD|1|A|G|368
7AQD|1|A|A|369
*
7AQD|1|A|U|381
7AQD|1|A|G|382
7AQD|1|A|U|383
7AQD|1|A|A|384
7AQD|1|A|G|385

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24