J3_7ASN_009

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7ASN|1|A|A|2545, 7ASN|1|A|U|2546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASN_009 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1075

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7ASN|1|A|C|2544
7ASN|1|A|A|2545
7ASN|1|A|U|2546
7ASN|1|A|C|2547
*
7ASN|1|A|G|2572
7ASN|1|A|U|2573
7ASN|1|A|U|2574
*
7ASN|1|A|A|2588
7ASN|1|A|U|2589
7ASN|1|A|U|2590
7ASN|1|A|A|2591
7ASN|1|A|A|2592
7ASN|1|A|A|2593
7ASN|1|A|G|2594

Current chains

Chain A

23S

Nearby chains

Chain G

50S ribosomal protein L14