J3_7ASO_006

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASO_006 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.159

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

7ASO|1|Y|G|30
7ASO|1|Y|C|31
*
7ASO|1|Y|G|520
7ASO|1|Y|U|521
7ASO|1|Y|G|522
7ASO|1|Y|A|523
7ASO|1|Y|A|524
7ASO|1|Y|A|525
7ASO|1|Y|A|526
7ASO|1|Y|G|527
*
7ASO|1|Y|C|554
7ASO|1|Y|C|555

Current chains

Chain Y

23S

Nearby chains

Chain S

50S ribosomal protein L20

Chain Z

50S ribosomal protein L24