J3_7ASO_010

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASO_010 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1084

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7ASO|1|Y|C|743
7ASO|1|Y|A|744
7ASO|1|Y|G|745
*
7ASO|1|Y|C|777
7ASO|1|Y|G|778
7ASO|1|Y|A|779
7ASO|1|Y|A|780
7ASO|1|Y|C|781
*
7ASO|1|Y|G|805
7ASO|1|Y|A|806
7ASO|1|Y|U|807
7ASO|1|Y|G|808

Current chains

Chain Y

23S

Nearby chains