J3_7ASO_016

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7ASO|1|Y|A|2545, 7ASO|1|Y|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASO_016 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1209

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7ASO|1|Y|C|2544
7ASO|1|Y|A|2545
7ASO|1|Y|U|2546
7ASO|1|Y|C|2547
*
7ASO|1|Y|G|2572
7ASO|1|Y|U|2573
7ASO|1|Y|U|2574
*
7ASO|1|Y|A|2588
7ASO|1|Y|U|2589
7ASO|1|Y|U|2590
7ASO|1|Y|A|2591
7ASO|1|Y|A|2592
7ASO|1|Y|A|2593
7ASO|1|Y|G|2594

Current chains

Chain Y

23S

Nearby chains

Chain N

50S ribosomal protein L14