J3_7ASP_004

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

7ASP|1|X|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASP_004 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.5798

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7ASP|1|X|C|1248
7ASP|1|X|A|1249
7ASP|1|X|A|1250
7ASP|1|X|U|1251
7ASP|1|X|G|1252
*
7ASP|1|X|C|1307
7ASP|1|X|U|1308
7ASP|1|X|C|1309
7ASP|1|X|A|1310
7ASP|1|X|G|1311
7ASP|1|X|U|1312
7ASP|1|X|U|1313
7ASP|1|X|C|1314
*
7ASP|1|X|G|1345
7ASP|1|X|C|1346
7ASP|1|X|U|1347
7ASP|1|X|G|1348

Current chains

Chain X

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S13

Chain p

30S ribosomal protein S7