3D structure

PDB id
7AZO (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AZO_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1004
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85722.1
Basepair signature
cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
Number of instances in this motif group
5

Unit IDs

7AZO|1|16SA|C|1559
7AZO|1|16SA|A|1560
7AZO|1|16SA|A|1561
7AZO|1|16SA|G|1562
*
7AZO|1|16SA|C|1971
7AZO|1|16SA|U|1972
7AZO|1|16SA|A|1973
7AZO|1|16SA|G|1974
7AZO|1|16SA|U|1975
7AZO|1|16SA|A|1976
7AZO|1|16SA|A|1977
*
7AZO|1|16SA|U|2000
7AZO|1|16SA|G|2001
7AZO|1|16SA|A|2002
7AZO|1|16SA|A|2003
7AZO|1|16SA|U|2004
7AZO|1|16SA|A|2005
7AZO|1|16SA|C|2006
7AZO|1|16SA|G|2007

Current chains

Chain 16SA
16S rRNA

Nearby chains

Chain ESIA
Transfer RNA; tRNA
Chain S7A
30S ribosomal protein S7
Chain S9A
30S ribosomal protein S9

Coloring options:


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