J3_7AZO_027

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZO_027 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0629

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

7AZO|1|23SA|G|30
7AZO|1|23SA|C|31
*
7AZO|1|23SA|G|502
7AZO|1|23SA|U|503
7AZO|1|23SA|G|504
7AZO|1|23SA|A|505
7AZO|1|23SA|A|506
7AZO|1|23SA|A|507
7AZO|1|23SA|A|508
7AZO|1|23SA|G|509
*
7AZO|1|23SA|C|536
7AZO|1|23SA|C|537

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L20A

50S ribosomal protein L20

Chain L22A

50S ribosomal protein L22

Chain L24A

50S ribosomal protein L24