J3_7AZO_031

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZO_031 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.0508

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7AZO|1|23SA|C|747
7AZO|1|23SA|A|748
7AZO|1|23SA|G|749
*
7AZO|1|23SA|C|781
7AZO|1|23SA|G|782
7AZO|1|23SA|A|783
7AZO|1|23SA|A|784
7AZO|1|23SA|C|785
*
7AZO|1|23SA|G|809
7AZO|1|23SA|A|810
7AZO|1|23SA|U|811
7AZO|1|23SA|G|812

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L2A

50S ribosomal protein L2