J3_7AZO_036

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZO_036 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.0591

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7AZO|1|23SA|U|2116
7AZO|1|23SA|U|2117
7AZO|1|23SA|G|2118
*
7AZO|1|23SA|C|2221
7AZO|1|23SA|U|2222
7AZO|1|23SA|A|2223
7AZO|1|23SA|A|2224
7AZO|1|23SA|C|2225
*
7AZO|1|23SA|G|2238
7AZO|1|23SA|G|2239
7AZO|1|23SA|A|2240
7AZO|1|23SA|C|2241
7AZO|1|23SA|A|2242
7AZO|1|23SA|G|2243

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L28A

50S ribosomal protein L28

Chain L2A

50S ribosomal protein L2

Chain L9A

50S ribosomal protein L9