J3_7AZO_064
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 7AZO|1|23SA|U|531, 7AZO|1|23SA|G|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AZO_064 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0791
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7AZO|1|23SA|G|30
7AZO|1|23SA|C|31
*
7AZO|1|23SA|G|502
7AZO|1|23SA|U|503
7AZO|1|23SA|G|504
7AZO|1|23SA|A|505
7AZO|1|23SA|A|506
7AZO|1|23SA|A|507
7AZO|1|23SA|A|508
7AZO|1|23SA|G|509
7AZO|1|23SA|A|510
7AZO|1|23SA|A|511
7AZO|1|23SA|C|512
*
7AZO|1|23SA|G|523
7AZO|1|23SA|A|524
7AZO|1|23SA|G|525
7AZO|1|23SA|U|526
7AZO|1|23SA|G|527
7AZO|1|23SA|A|528
7AZO|1|23SA|A|529
7AZO|1|23SA|A|530
7AZO|1|23SA|U|531
7AZO|1|23SA|A|532
7AZO|1|23SA|G|533
7AZO|1|23SA|A|534
7AZO|1|23SA|G|535
7AZO|1|23SA|C|536
7AZO|1|23SA|C|537
Current chains
- Chain 23SA
- 23S rRNA
Nearby chains
- Chain L20A
- 50S ribosomal protein L20
- Chain L22A
- 50S ribosomal protein L22
- Chain L24A
- 50S ribosomal protein L24
Coloring options: