J3_7AZO_065
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7AZO|1|23SA|C|34, 7AZO|1|23SA|U|476, 7AZO|1|23SA|C|484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AZO_065 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1835
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7AZO|1|23SA|C|32
7AZO|1|23SA|U|33
7AZO|1|23SA|C|34
7AZO|1|23SA|G|35
*
7AZO|1|23SA|C|473
7AZO|1|23SA|G|474
7AZO|1|23SA|A|475
7AZO|1|23SA|U|476
7AZO|1|23SA|A|477
7AZO|1|23SA|G|478
7AZO|1|23SA|C|479
7AZO|1|23SA|G|480
7AZO|1|23SA|C|481
7AZO|1|23SA|A|482
7AZO|1|23SA|C|483
7AZO|1|23SA|C|484
7AZO|1|23SA|A|485
7AZO|1|23SA|G|486
7AZO|1|23SA|U|487
7AZO|1|23SA|A|488
7AZO|1|23SA|C|489
*
7AZO|1|23SA|G|496
7AZO|1|23SA|G|497
7AZO|1|23SA|A|498
7AZO|1|23SA|A|499
7AZO|1|23SA|A|500
7AZO|1|23SA|G|501
Current chains
- Chain 23SA
- 23S rRNA
Nearby chains
- Chain L20A
- 50S ribosomal protein L20
- Chain L23A
- 50S ribosomal protein L23
- Chain L34A
- 50S ribosomal protein L34
- Chain L4A
- 50S ribosomal protein L4
Coloring options: