J3_7AZO_071

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZO_071 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0735

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7AZO|1|23SB|G|1473
7AZO|1|23SB|G|1474
7AZO|1|23SB|G|1475
7AZO|1|23SB|A|1476
7AZO|1|23SB|C|1477
7AZO|1|23SB|G|1478
*
7AZO|1|23SB|C|1614
7AZO|1|23SB|C|1615
*
7AZO|1|23SB|G|1618
7AZO|1|23SB|A|1619
7AZO|1|23SB|A|1620
7AZO|1|23SB|A|1621
7AZO|1|23SB|A|1622
7AZO|1|23SB|G|1623
7AZO|1|23SB|C|1624

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L2B

50S ribosomal protein L2