J3_7AZS_026

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

7AZS|1|16SB|U|1867, 7AZS|1|16SB|U|1929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_026 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1601

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7AZS|1|16SB|C|1864
7AZS|1|16SB|A|1865
7AZS|1|16SB|A|1866
7AZS|1|16SB|U|1867
7AZS|1|16SB|G|1868
*
7AZS|1|16SB|C|1923
7AZS|1|16SB|C|1924
7AZS|1|16SB|C|1925
7AZS|1|16SB|A|1926
7AZS|1|16SB|G|1927
7AZS|1|16SB|U|1928
7AZS|1|16SB|U|1929
7AZS|1|16SB|C|1930
*
7AZS|1|16SB|G|1961
7AZS|1|16SB|C|1962
7AZS|1|16SB|C|1963
7AZS|1|16SB|G|1964

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S13B

30S ribosomal protein S13

Chain S7B

30S ribosomal protein S7

Chain THXB

30S ribosomal protein Thx