J3_7AZS_042

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

7AZS|1|23SB|U|289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_042 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.1778

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7AZS|1|23SB|U|259
7AZS|1|23SB|A|260
7AZS|1|23SB|A|261
7AZS|1|23SB|A|262
7AZS|1|23SB|C|263
*
7AZS|1|23SB|G|283
7AZS|1|23SB|G|284
7AZS|1|23SB|G|285
7AZS|1|23SB|U|286
7AZS|1|23SB|C|287
7AZS|1|23SB|G|288
7AZS|1|23SB|U|289
7AZS|1|23SB|G|290
*
7AZS|1|23SB|C|397
7AZS|1|23SB|G|398

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L28B

50S ribosomal protein L28

Chain L9B

50S ribosomal protein L9