J3_7AZS_057

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7AZS|1|16SA|C|1841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_057 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1579

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7AZS|1|16SA|C|1613
7AZS|1|16SA|U|1614
7AZS|1|16SA|U|1615
7AZS|1|16SA|G|1616
7AZS|1|16SA|A|1617
7AZS|1|16SA|C|1618
7AZS|1|16SA|A|1619
7AZS|1|16SA|U|1620
*
7AZS|1|16SA|A|1672
7AZS|1|16SA|C|1673
7AZS|1|16SA|A|1674
7AZS|1|16SA|G|1675
*
7AZS|1|16SA|C|1837
7AZS|1|16SA|U|1838
7AZS|1|16SA|U|1839
7AZS|1|16SA|A|1840
7AZS|1|16SA|C|1841
7AZS|1|16SA|G|1842

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S14A

30S ribosomal protein S14 type Z