J3_7AZS_065

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

7AZS|1|23SA|U|531, 7AZS|1|23SA|G|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_065 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0811

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

7AZS|1|23SA|G|30
7AZS|1|23SA|C|31
*
7AZS|1|23SA|G|502
7AZS|1|23SA|U|503
7AZS|1|23SA|G|504
7AZS|1|23SA|A|505
7AZS|1|23SA|A|506
7AZS|1|23SA|A|507
7AZS|1|23SA|A|508
7AZS|1|23SA|G|509
7AZS|1|23SA|A|510
7AZS|1|23SA|A|511
7AZS|1|23SA|C|512
*
7AZS|1|23SA|G|523
7AZS|1|23SA|A|524
7AZS|1|23SA|G|525
7AZS|1|23SA|U|526
7AZS|1|23SA|G|527
7AZS|1|23SA|A|528
7AZS|1|23SA|A|529
7AZS|1|23SA|A|530
7AZS|1|23SA|U|531
7AZS|1|23SA|A|532
7AZS|1|23SA|G|533
7AZS|1|23SA|A|534
7AZS|1|23SA|G|535
7AZS|1|23SA|C|536
7AZS|1|23SA|C|537

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L20A

50S ribosomal protein L20

Chain L22A

50S ribosomal protein L22

Chain L24A

50S ribosomal protein L24