J3_7AZY_004

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7AZY|1|E|A|817, 7AZY|1|E|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZY_004 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0746

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7AZY|1|E|U|814
7AZY|1|E|G|815
7AZY|1|E|A|816
7AZY|1|E|A|817
7AZY|1|E|C|818
7AZY|1|E|U|819
7AZY|1|E|A|820
*
7AZY|1|E|U|905
7AZY|1|E|A|906
7AZY|1|E|G|907
*
7AZY|1|E|C|923
7AZY|1|E|G|924
7AZY|1|E|A|925
7AZY|1|E|A|926

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L15-A

Chain g

60S ribosomal protein L37-A

Chain x

60S ribosomal protein L2-A