J3_7AZY_008

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7AZY|1|E|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZY_008 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1007

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7AZY|1|E|U|1479
7AZY|1|E|G|1480
7AZY|1|E|A|1481
7AZY|1|E|A|1482
7AZY|1|E|G|1483
7AZY|1|E|U|1484
7AZY|1|E|G|1485
*
7AZY|1|E|C|1857
7AZY|1|E|A|1858
7AZY|1|E|A|1859
*
7AZY|1|E|U|1871
7AZY|1|E|C|1872
7AZY|1|E|U|1873
7AZY|1|E|A|1874

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L34-A

Chain H

60S ribosomal protein L19-A