J3_7B7D_003

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1199

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7B7D|1|2|A|760
7B7D|1|2|G|761
7B7D|1|2|A|762
7B7D|1|2|G|763
*
7B7D|1|2|C|773
7B7D|1|2|A|774
7B7D|1|2|G|775
*
7B7D|1|2|U|785
7B7D|1|2|C|786
7B7D|1|2|G|787
7B7D|1|2|A|788
7B7D|1|2|A|789
7B7D|1|2|U|790

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A