J3_7B7D_009

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

7B7D|1|2|A|1217, 7B7D|1|2|G|1445, 7B7D|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_009 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1631

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7B7D|1|2|C|1215
7B7D|1|2|C|1216
7B7D|1|2|A|1217
7B7D|1|2|G|1218
7B7D|1|2|A|1219
7B7D|1|2|C|1220
*
7B7D|1|2|G|1263
7B7D|1|2|G|1264
7B7D|1|2|G|1265
7B7D|1|2|U|1266
7B7D|1|2|G|1267
*
7B7D|1|2|U|1442
7B7D|1|2|U|1443
7B7D|1|2|A|1444
7B7D|1|2|G|1445
7B7D|1|2|A|1446
7B7D|1|2|C|1447
7B7D|1|2|G|1448

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31