J3_7B7D_024

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_024 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1421

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7B7D|1|LA|C|1631
7B7D|1|LA|A|1632
*
7B7D|1|LA|U|1641
7B7D|1|LA|A|1642
7B7D|1|LA|A|1643
7B7D|1|LA|C|1644
7B7D|1|LA|U|1645
*
7B7D|1|LA|A|1810
7B7D|1|LA|G|1811

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LV

60S ribosomal protein L27-A

Chain Lc

60S ribosomal protein L34-A

Chain Lg

60S ribosomal protein L38