J3_7B7D_028

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7B7D|1|LA|A|2887, 7B7D|1|LA|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_028 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.0748

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7B7D|1|LA|U|2886
7B7D|1|LA|A|2887
7B7D|1|LA|U|2888
7B7D|1|LA|C|2889
*
7B7D|1|LA|G|2914
7B7D|1|LA|U|2915
7B7D|1|LA|U|2916
*
7B7D|1|LA|A|2930
7B7D|1|LA|C|2931
7B7D|1|LA|U|2932
7B7D|1|LA|A|2933
7B7D|1|LA|A|2934
7B7D|1|LA|U|2935
7B7D|1|LA|A|2936

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A

Chain Lr

60S ribosomal protein L23-A