3D structure

PDB id
7B7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCAUAU*AG*UG
Length
10 nucleotides
Bulged bases
7B7D|1|LB|U|12
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7B7D_030 not in the Motif Atlas
Homologous match to J3_5TBW_045
Geometric discrepancy: 0.0963
The information below is about J3_5TBW_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52398.1
Basepair signature
cWW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

7B7D|1|LB|C|9
7B7D|1|LB|C|10
7B7D|1|LB|A|11
7B7D|1|LB|U|12
7B7D|1|LB|A|13
7B7D|1|LB|U|14
*
7B7D|1|LB|A|66
7B7D|1|LB|G|67
*
7B7D|1|LB|U|111
7B7D|1|LB|G|112

Current chains

Chain LB
5S rRNA

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain LG
60S ribosomal protein L5
Chain LL
60S ribosomal protein L10
Chain Lp
60S ribosomal protein L21-A

Coloring options:


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