J3_7B7D_036

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

7B7D|1|LA|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_036 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.0989

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97456.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7B7D|1|LA|C|185
7B7D|1|LA|U|186
7B7D|1|LA|A|187
7B7D|1|LA|U|188
7B7D|1|LA|G|189
*
7B7D|1|LA|C|205
7B7D|1|LA|G|206
7B7D|1|LA|U|207
7B7D|1|LA|C|208
7B7D|1|LA|A|209
7B7D|1|LA|U|210
7B7D|1|LA|A|211
7B7D|1|LA|G|212
7B7D|1|LA|A|213
7B7D|1|LA|G|214
*
7B7D|1|LA|C|226
7B7D|1|LA|G|227
7B7D|1|LA|U|228
7B7D|1|LA|G|229
7B7D|1|LA|U|230
7B7D|1|LA|G|231

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain LU

60S ribosomal protein L26-A