J3_7BGD_004
3D structure
- PDB id
- 7BGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAA*UGCAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 7BGD|1|a|U|881, 7BGD|1|a|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BGD_004 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1346
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7BGD|1|a|C|834
7BGD|1|a|U|835
7BGD|1|a|A|836
7BGD|1|a|A|837
*
7BGD|1|a|U|867
7BGD|1|a|G|868
7BGD|1|a|C|869
7BGD|1|a|A|870
7BGD|1|a|G|871
*
7BGD|1|a|C|878
7BGD|1|a|A|879
7BGD|1|a|U|880
7BGD|1|a|U|881
7BGD|1|a|A|882
7BGD|1|a|A|883
7BGD|1|a|G|884
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- mRNA
- Chain b
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S8
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