J3_7BGE_003
3D structure
- PDB id
- 7BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCUA
- Length
- 27 nucleotides
- Bulged bases
- 7BGE|1|a|A|985, 7BGE|1|a|G|986
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BGE_003 not in the Motif Atlas
- Homologous match to J3_6CZR_062
- Geometric discrepancy: 0.2065
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7BGE|1|a|U|965
7BGE|1|a|U|966
7BGE|1|a|U|967
7BGE|1|a|A|968
7BGE|1|a|A|969
7BGE|1|a|U|970
7BGE|1|a|U|971
7BGE|1|a|C|972
*
7BGE|1|a|G|983
7BGE|1|a|A|984
7BGE|1|a|A|985
7BGE|1|a|G|986
7BGE|1|a|A|987
7BGE|1|a|A|988
7BGE|1|a|C|989
7BGE|1|a|C|990
7BGE|1|a|U|991
7BGE|1|a|U|992
7BGE|1|a|A|993
7BGE|1|a|C|994
7BGE|1|a|C|995
*
7BGE|1|a|G|1231
7BGE|1|a|G|1232
7BGE|1|a|G|1233
7BGE|1|a|C|1234
7BGE|1|a|U|1235
7BGE|1|a|A|1236
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
Coloring options: